| Offensive Starters | | | | | |
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| QB | John Brodie | 29 | 7 | 12 | 193 for 392, 2,498 yards, 14 td, 16 int, & 27 rushes for 135 yards and 2 td | San Francisco 49ers / 1st / 3rd pick / 1957 |
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| FB | Mike Lind | 24 | 1 | 9 | 100 rushes for 256 yards, 7 td, & 25 catches for 178 yards and 0 td | San Francisco 49ers / 5th / 64th pick / 1962, San Diego Chargers / 19th / 152nd pick / 1962 |
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| LH | Don Lisbon | 23 | 1 | 4 | 55 rushes for 162 yards, 0 td, & 13 catches for 104 yards and 1 td | San Francisco 49ers / 3rd / 36th pick / 1963 |
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| RH | Bernie Casey | 25 | 3 | 13 | 0 rushes for 0 yards, 0 td, & 58 catches for 808 yards and 4 td | San Francisco 49ers / 1st / 9th pick / 1961, New York Titans / 9th / 69th pick / 1961 |
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| SE | Dave Parks* | 23 | Rook | 14 | 36 catches for 703 yards, 8 td | San Francisco 49ers / 1st / 1st pick / 1964, San Diego Chargers / 4th / 32nd pick / 1964 |
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| TE | Monty Stickles | 26 | 4 | 14 | 40 catches for 685 yards, 3 td | San Francisco 49ers / 1st / 11th pick / 1960 |
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| LT | Len Rohde | 26 | 4 | 14 | | San Francisco 49ers / 5th / 59th pick / 1960 |
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| LG | John Thomas | 29 | 6 | 14 | 3 fumbles recovered | San Francisco 49ers / 23rd / 272nd pick / 1957 |
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| C | Bruce Bosley | 31 | 8 | 14 | 1 fumble recovered | San Francisco 49ers / 2nd / 15th pick / 1956 |
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| RG | Leon Donohue | 25 | 2 | 13 | | Oakland Raiders / 29th / 225th pick / 1962, San Francisco 49ers / 9th / 118th pick / 1961 |
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| RT | Walt Rock | 23 | 1 | 14 | 2 fumbles recovered | Kansas City Chiefs / 2nd / 16th pick / 1963, San Francisco 49ers / 2nd / 21st pick / 1963 |
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| Defensive Starters | | | | | |
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| LDE | Daniel Colchico | 29 | 4 | 11 | 0 interceptions, 2 fumbles recovered | San Francisco 49ers / 7th / 78th pick / 1959 |
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| LDT | Charlie Krueger* | 27 | 5 | 14 | | San Francisco 49ers / 1st / 9th pick / 1958 |
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| RDT | Roland Lakes | 25 | 3 | 14 | | San Francisco 49ers / 2nd / 24th pick / 1961, Boston Patriots / 9th / 66th pick / 1961 |
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| RDE | Clark Miller | 26 | 2 | 13 | | San Francisco 49ers / 5th / 58th pick / 1961, Oakland Raiders / 14th / 108th pick / 1961 |
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| LLB | Dave Wilcox | 22 | Rook | 9 | 1 interception, 1 fumble recovered | San Francisco 49ers / 3rd / 29th pick / 1964, Houston Oilers / 6th / 46th pick / 1964 |
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| MLB | Mike Dowdle | 27 | 4 | 14 | 1 interception, 0 fumbles recovered | San Francisco 49ers / 15th / 179th pick / 1960 |
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| RLB | Matt Hazeltine* | 31 | 9 | 14 | 1 interception, 1 fumble recovered | San Francisco 49ers / 4th / 45th pick / 1955 |
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| LCB | Jimmy Johnson | 26 | 3 | 14 | 3 interceptions, 0 fumbles recovered | San Francisco 49ers / 1st / 6th pick / 1961, San Diego Chargers / 4th / 31st pick / 1961 |
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| RCB | Abe Woodson | 30 | 6 | 12 | 2 interceptions, 3 fumbles recovered | San Francisco 49ers / 2nd / 15th pick / 1957 |
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| LS | Elbert Kimbrough | 26 | 3 | 14 | 2 interceptions, 2 fumbles recovered | Los Angeles Rams / 2nd / 18th pick / 1961, Oakland Raiders / 4th / 28th pick / 1961 |
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| RS | Kermit Alexander | 23 | 1 | 12 | 5 interceptions, 5 fumbles recovered | Denver Broncos / 1st / 5th pick / 1963, San Francisco 49ers / 1st / 8th pick / 1963 |
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| Special Teams Starters | | | | | |
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| K | Tommy Davis | 30 | 5 | | 8 of 25 field goals & 30 of 30 extra points | San Francisco 49ers / 11th / 128th pick / 1957 |
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| P | Tommy Davis | 30 | 5 | | 79 punts for a 45.6 average, 0 blocked | San Francisco 49ers / 11th / 128th pick / 1957 |
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| PR | Abe Woodson | 30 | 6 | 12 | 22 punt returns for a 6.0 average and 0 td | San Francisco 49ers / 2nd / 15th pick / 1957 |
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| KR | Abe Woodson | 30 | 6 | 12 | 32 kick returns for a 27.5 average and 0 td | San Francisco 49ers / 2nd / 15th pick / 1957 |
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