| Offensive Starters | | | | | |
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| QB | Colin Kaepernick | 26 | 2 | 16 | 243 for 416, 3,197 yards, 21 td, 8 int, & 92 rushes for 524 yards and 4 td | San Francisco 49ers / 2nd / 36th pick / 2011 |
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| RB | Frank Gore* | 30 | 8 | 16 | 276 rushes for 1,128 yards, 9 td, & 16 catches for 141 yards and 0 td | San Francisco 49ers / 3rd / 65th pick / 2005 |
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| FB | Bruce Miller | 26 | 2 | 13 | 7 rushes for 13 yards, 0 td, & 25 catches for 243 yards and 0 td | San Francisco 49ers / 7th / 211th pick / 2011 |
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| WR | Anquan Boldin | 33 | 10 | 16 | 85 catches for 1,179 yards, 7 td, & 2 rushes for 11 yards and 0 td | Arizona Cardinals / 2nd / 54th pick / 2003 |
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| TE | Vernon Davis* | 29 | 7 | 15 | 52 catches for 850 yards, 13 td | San Francisco 49ers / 1st / 6th pick / 2006 |
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| LT | Joe Staley* | 29 | 6 | 16 | | San Francisco 49ers / 1st / 28th pick / 2007 |
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| LG | Mike Iupati* | 26 | 3 | 12 | | San Francisco 49ers / 1st / 17th pick / 2010 |
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| C | Jonathan Goodwin | 35 | 11 | 16 | 1 fumble recovered | New York Jets / 5th / 154th pick / 2002 |
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| RG | Alex Boone | 26 | 3 | 16 | | |
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| RT | Anthony Davis | 24 | 3 | 16 | | San Francisco 49ers / 1st / 11th pick / 2010 |
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| Defensive Starters | | | | | |
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| LDT | Ray McDonald | 29 | 6 | 14 | 3.5 sacks, 0 interceptions, 0 fumbles recovered | San Francisco 49ers / 3rd / 97th pick / 2007 |
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| NT | Glenn Dorsey | 28 | 5 | 13 | 2.0 sacks, 0 interceptions, 0 fumbles recovered | Kansas City Chiefs / 1st / 5th pick / 2008 |
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| RDT | Justin Smith* | 34 | 12 | 16 | 6.5 sacks, 0 interceptions, 0 fumbles recovered | Cincinnati Bengals / 1st / 4th pick / 2001 |
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| LB | NaVorro Bowman*+ | 25 | 3 | 16 | | San Francisco 49ers / 3rd / 91st pick / 2010 |
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| LB | Ahmad Brooks* | 29 | 7 | 16 | | Cincinnati Bengals / 3rd / 2006 Supp |
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| LB | Dan Skuta | 27 | 4 | 8 | | |
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| LB | Aldon Smith | 24 | 2 | 8 | | San Francisco 49ers / 1st / 7th pick / 2011 |
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| LB | Patrick Willis* | 28 | 6 | 14 | | San Francisco 49ers / 1st / 11th pick / 2007 |
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| LCB | Carlos Rogers | 32 | 8 | 16 | 0.0 sacks, 2 interceptions, 0 fumbles recovered | Washington Redskins / 1st / 9th pick / 2005 |
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| RCB | Tarell Brown | 28 | 6 | 10 | 0.0 sacks, 0 interceptions, 2 fumbles recovered | San Francisco 49ers / 5th / 147th pick / 2007 |
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| SS | Donte Whitner* | 28 | 7 | 16 | 0.0 sacks, 2 interceptions, 1 fumble recovered | Buffalo Bills / 1st / 8th pick / 2006 |
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| FS | Eric Reid* | 22 | Rook | 16 | 0.0 sacks, 4 interceptions, 2 fumbles recovered | San Francisco 49ers / 1st / 18th pick / 2013 |
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| Special Teams Starters | | | | | |
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| K | Phil Dawson | 38 | 14 | 0 | 32 of 36 field goals & 44 of 44 extra points | |
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| P | Andy Lee | 31 | 9 | 0 | 79 punts for a 48.2 average, 0 blocked | San Francisco 49ers / 6th / 188th pick / 2004 |
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